Topic pack · switched off
DDLS pack: evolution and biodiversity
Topic pack for DDLS, 27 October. Loaded on top of the core, removed afterwards.
Synthesised claims
AEach claim cites its evidence; a second model has checked it against that evidence.
No synthesis yet for this bundle.
Anchor papers
BFound through citations
C| Paper | Year | License |
|---|---|---|
| Artificial Intelligence-Driven Enzyme Engineering from Structural Prediction to De Novo Design Journal of Agricultural and Food Chemistry discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.69 | 2026 | Red |
| Advancing bioinformatics with language models: components, applications, and perspectives Briefings in Bioinformatics discovered: cites 3 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen; Genome modelling and design across all domains of ); similarity 0.71 | 2026 | Green |
| Language Modeling Materializes a World Model of Protein Biology bioRxiv (Cold Spring Harbor Laboratory)· preprint discovered: cites 1 anchor(s) (Simulating 500 million years of evolution with a l); similarity 0.74 | 2026 | Green |
| AI-enabled protein design facilitates future plant research and crop breeding PLANT PHYSIOLOGY discovered: cites 1 anchor(s) (Genome modelling and design across all domains of ); similarity 0.74 | 2026 | Green |
| PLANeT: Understanding and leveraging the genome of land plants for a sustainable future Cell discovered: cites 1 anchor(s) (Genome modelling and design across all domains of ); similarity 0.72 | 2026 | Yellow |
| Rapid directed evolution guided by protein language models and epistatic interactions Science discovered: cites 1 anchor(s) (Simulating 500 million years of evolution with a l); similarity 0.72 | 2026 | Green |
| Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes · preprint discovered: cites 1 anchor(s) (Genome modelling and design across all domains of ); similarity 0.72 | 2026 | Green |
| Genome modeling and design across all domains of life with Evo 2 bioRxiv (Cold Spring Harbor Laboratory)· preprint discovered: cites 1 anchor(s) (Sequence modeling and design from molecular to gen); similarity 0.77 | 2025 | Yellow |
| Emerging frontiers in protein structure prediction following the AlphaFold revolution Journal of The Royal Society Interface discovered: cites 1 anchor(s) (Simulating 500 million years of evolution with a l); similarity 0.76 | 2025 | Green |
| Teaching AI to speak protein Current Opinion in Structural Biology discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.73 | 2025 | Green |
| A complete and dynamic tree of birds Proceedings of the National Academy of Sciences | 2025 | Green |
| AI-empowered human microbiome research Gut discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.67 | 2025 | Yellow |
| Semantic design of functional de novo genes from a genomic language model Nature discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.71 | 2025 | Green |
| Morphological evolution in a time of phenomics Paleobiology discovered: cites 1 anchor(s) (Evolutionary constraint and innovation across hund); similarity 0.74 | 2025 | Green |
| Large language models for drug discovery and development Patterns discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.67 | 2025 | Green |
| Design of highly functional genome editors by modelling CRISPR–Cas sequences Nature discovered: cites 1 anchor(s) (Sequence modeling and design from molecular to gen); similarity 0.72 | 2025 | Yellow |
| Artificial intelligence–powered biofoundries for protein engineering and metabolic engineering Current Opinion in Biotechnology discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.69 | 2025 | Yellow |
| Generative design of novel bacteriophages with genome language models bioRxiv (Cold Spring Harbor Laboratory)· preprint discovered: cites 2 anchor(s) (Simulating 500 million years of evolution with a l; Sequence modeling and design from molecular to gen); similarity 0.68 | 2025 | Green |
| Population Genomics of Adaptive Radiation Molecular Ecology discovered: cites 1 anchor(s) (Evolution of Darwin’s finches and their beaks reve); similarity 0.75 | 2024 | Orange conflict |
| New frontiers in AI for biodiversity research and conservation with multimodal language models · preprint discovered: cites 1 anchor(s) (BioCLIP: A Vision Foundation Model for the Tree of); similarity 0.73 | 2024 | Orange |
| Cellular, Molecular, and Genetic Mechanisms of Avian Beak Development and Evolution Annual Review of Genetics discovered: cites 1 anchor(s) (Evolution of Darwin’s finches and their beaks reve); similarity 0.73 | 2024 | Green |
| A complete and dynamic tree of birds bioRxiv (Cold Spring Harbor Laboratory)· preprint discovered: cites 1 anchor(s) (Evolution of Darwin’s finches and their beaks reve); similarity 0.73 | 2024 | Green |
| Evolutionary-scale prediction of atomic-level protein structure with a language model Science discovered: cites 1 anchor(s) (Highly accurate protein structure prediction with ); similarity 0.75 | 2023 | Green |
| Improving deep learning acoustic classifiers with contextual information for wildlife monitoring Ecological Informatics discovered: cites 1 anchor(s) (BirdNET: A deep learning solution for avian divers); similarity 0.74 | 2023 | Green |
| The evolution of aging and lifespan Trends in Genetics discovered: cites 1 anchor(s) (Evolutionary constraint and innovation across hund); similarity 0.73 | 2023 | Green |
| Genome annotation: From human genetics to biodiversity genomics Cell Genomics discovered: cites 1 anchor(s) (Evolutionary constraint and innovation across hund); similarity 0.75 | 2023 | Green |