Licenses

Copyright is built into the flow instead of left to the reader’s judgement. The class decides what the system may store, index, use in synthesis and show. Last recheck: 1 Oct, 03:30.

What each class allows

A

Conflicts awaiting review

B

The sources disagree. Until a human decides, the strictest class applies.

Reviewed by a human

C

The reviewer chose among the classes the sources gave, and said why. A review lapses if a source changes its answer.

PaperGate saidReviewed asWhy
Accelerating scientific discovery with Co-ScientistOrangeGreenCrossref (publisher, version of record) and Europe PMC both give CC-BY 4.0; OpenAlex and Unpaywall only report other-oa. Reviewed by Fredrik 2026-09-30.
Generational Divide in AI Adoption for Academic Writing: Evidence From Serbian Social ScientistsRedGreenApplies to the submitted version (preprint) in an open repository (OpenAlex/Unpaywall, oa_status green), which is the copy this system uses; the version of record is under publisher terms (Crossref). Reviewed by Fredrik 2026-09-30. Corrected 2026-10-01: the earlier note called it the accepted manuscript; Unpaywall lists it as submittedVersion.
Resisting the Algorithmic Management of Science: Craft and Community After Generative AIRedGreenApplies to the submitted version (preprint) in an open repository (OpenAlex/Unpaywall, oa_status green), which is the copy this system uses; the version of record is under publisher terms (Crossref). Reviewed by Fredrik 2026-09-30. Corrected 2026-10-01: the earlier note called it the accepted manuscript; Unpaywall lists it as submittedVersion.
Business insights using RAG–LLMs: a review and case studyOrangeGreenThe publisher's Crossref record gives CC-BY 4.0 for the version of record; OpenAlex and Unpaywall only report other-oa. Reviewed by Fredrik 2026-09-30.
Automating Research Synthesis with Domain-Specific Large Language Model Fine-TuningRedYellowApplies to the submitted version (preprint) in an open repository (OpenAlex/Unpaywall, oa_status green), which is the copy this system uses; the version of record is under publisher terms (Crossref). Reviewed by Fredrik 2026-09-30. Corrected 2026-10-01: the earlier note called it the accepted manuscript; Unpaywall lists it as submittedVersion.
Large Language Models in Medicine: The Potentials and PitfallsRedYellowApplies to the submitted version (preprint) in an open repository (OpenAlex/Unpaywall, oa_status green), which is the copy this system uses; the version of record is under publisher terms (Crossref). Reviewed by Fredrik 2026-09-30. Corrected 2026-10-01: the earlier note called it the accepted manuscript; Unpaywall lists it as submittedVersion.
Population Genomics of Adaptive RadiationRedOrangeFree to read on the publisher site (bronze) without a reuse license; Wiley's terms govern reuse, so orange describes it exactly. Reviewed by Fredrik 2026-09-30.

Retracted

D

Kept visible, never synthesised.

All papers by class

E
PaperYearClassFull text heldChecked
Operationalizing Large Language Models for Clinical Research Data Extraction: Methods, Quality Control, and Governance2026Greenyes30 Sept 2026
Artificial Intelligence agents for biological research: a survey2026Greenyes30 Sept 2026
Autonomous artificial intelligence, scientific research, and human values2026Greenyes30 Sept 2026
Enhancing soil science research with multi-agent artificial intelligence systems2026Greenyes30 Sept 2026
Evaluating Retrieval Augmented Generation: A Comprehensive Review of Evaluation Dimensions, Question Types, and Application2026Greenno30 Sept 2026
From foundation models to autonomous agents in biology2026Greenno30 Sept 2026
What are the limits to biomedical research acceleration through general-purpose AI?2026Greenyes30 Sept 2026
Reimagining biomedical science workflows in the age of large language models2026Greenno30 Sept 2026
Fine-Grained Detection of AI-Generated Writing in the Biomedical Literature2026Greenyes1 Oct 2026
Accelerating scientific discovery with Co-Scientist2026Green· reviewedyes30 Sept 2026
The need for verification in artificial intelligence-driven scientific discovery2026Greenno1 Oct 2026
The enrichment paradox: critical capability thresholds and irreversible dependency in human-AI symbiosis2026Greenyes30 Sept 2026
Augment Engineering: A Methodology for Multi-Tool AI Orchestration Across Professional Domains2026Greenyes30 Sept 2026
Artificial Intelligence for Discovery in Life Sciences2026Greenyes1 Oct 2026
Design Principles for Human-Agent Interaction2026Greenyes30 Sept 2026
Safety-Constrained Agentic AI for Autism Screening: A Multimodal, Clinician-Guided Architecture2026Greenyes30 Sept 2026
Rapid directed evolution guided by protein language models and epistatic interactions2026Greenno1 Oct 2026
Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes2026Greenno1 Oct 2026
When the thesis passes but the mind doesn’t: Generative artificial intelligence, proxy regimes and epistemic agency in universities2026Greenno30 Sept 2026
Building MCP-native hierarchical AI scientist ecosystems: a perspective on scaling multi-agent scientific discovery2026Greenyes30 Sept 2026
The impact of artificial intelligence software on the supervisor-graduate student relationships2026Greenno30 Sept 2026
Towards end-to-end automation of AI research2026Greenyes30 Sept 2026
Cognitive offloading and metacognitive calibration in generative AI-mediated doctoral learning: a grounded theory study of accountable reconstruction2026Greenyes30 Sept 2026
Artificial Intelligence in Medical Education: Transformative Potential, Current Applications, and Future Implications2026Greenyes1 Oct 2026
Will the widespread use of large language models in scientific writing undermine scientists’ critical thinking?2026Greenyes30 Sept 2026
AI-enabled protein design facilitates future plant research and crop breeding2026Greenyes30 Sept 2026
Language Modeling Materializes a World Model of Protein Biology2026Greenno30 Sept 2026
Advancing bioinformatics with language models: components, applications, and perspectives2026Greenyes30 Sept 2026
Large language models for drug discovery and development2025Greenyes1 Oct 2026
Advancing materials discovery through artificial intelligence2025Greenno1 Oct 2026
A systematic literature review of artificial intelligence (AI) in coaching: insights for future research and product development2025Greenno1 Oct 2026
Biomni: A General-Purpose Biomedical AI Agent2025Greenyes30 Sept 2026
Generative AI: reconfiguring supervision and doctoral research2025Greenyes30 Sept 2026
A surge of AI-driven publications: the impact on health professionals and potential mitigating solutions2025Greenyes1 Oct 2026
The Use of Large Language Models and Their Association With Enhanced Impact in Biomedical Research and Beyond2025Greenno1 Oct 2026
A Critical Analysis of Generative AI: Challenges, Opportunities, and Future Research Directions2025Greenyes30 Sept 2026
Generative Artificial Intelligence: Implications for Biomedical and Health Professions Education2025Greenno1 Oct 2026
Probing the limitations of multimodal language models for chemistry and materials research2025Greenyes30 Sept 2026
How should the advancement of large language models affect the practice of science?2025Greenyes1 Oct 2026
iRAT: Replanning and Controlled Retrieval for Robust LLM Reasoning2025Greenno1 Oct 2026
BioML-bench: Evaluation of AI Agents for End-to-End Biomedical ML2025Greenyes30 Sept 2026
Teaching AI to speak protein2025Greenno30 Sept 2026
Semantic design of functional de novo genes from a genomic language model2025Greenyes30 Sept 2026
Emerging frontiers in protein structure prediction following the AlphaFold revolution2025Greenyes30 Sept 2026
Morphological evolution in a time of phenomics2025Greenno30 Sept 2026
Generative design of novel bacteriophages with genome language models2025Greenno30 Sept 2026
The role of large language models in the peer-review process: opportunities and challenges for medical journal reviewers and editors2025Greenyes30 Sept 2026
The role of generative AI in academic and scientific authorship: an autopoietic perspective2025Greenno30 Sept 2026
The Epistemic Downside of Using LLM-Based Generative AI in Academic Writing2025Greenno30 Sept 2026
Generative Artificial Intelligence (GenAI) in the research process – A survey of researchers’ practices and perceptions2025Greenno30 Sept 2026
LLM Fine-Tuning: Concepts, Opportunities, and Challenges2025Greenno1 Oct 2026
A complete and dynamic tree of birds2025Greenyes1 Oct 2026
Generational Divide in AI Adoption for Academic Writing: Evidence From Serbian Social Scientists2025Green· reviewedno1 Oct 2026
Beyond Accuracy: A Multi-Dimensional Framework for Evaluating Enterprise Agentic AI Systems2025Greenyes30 Sept 2026
Delving into LLM-assisted writing in biomedical publications through excess vocabulary2025Greenyes30 Sept 2026
A Practical Guide for Designing, Developing, and Deploying Production-Grade Agentic AI Workflows2025Greenyes30 Sept 2026
Advancing Large Language Models with Enhanced Retrieval-Augmented Generation: Evidence from Biological UAV Swarm Control2025Greenno30 Sept 2026
Evaluating large language model workflows in clinical decision support for triage and referral and diagnosis2025Greenyes30 Sept 2026
A Survey of Conversational Search2025Greenno30 Sept 2026
AI as a catalyst for transforming scientific research: a perspective2025Greenyes1 Oct 2026
ChatGPT and generative AI are revolutionizing the scientific community: A Janus‐faced conundrum2024Greenyes1 Oct 2026
Materials science in the era of large language models: a perspective2024Greenno30 Sept 2026
Collaborative AI in the workplace: Enhancing organizational performance through resource-based and task-technology fit perspectives2024Greenno30 Sept 2026
Collaborative Intelligence: A Scoping Review Of Current Applications2024Greenno1 Oct 2026
Toward Robust RALMs: Revealing the Impact of Imperfect Retrieval on Retrieval-Augmented Language Models2024Greenno1 Oct 2026
RETRACTED: Cellular functions of spermatogonial stem cells in relation to JAK/STAT signaling pathway
Retracted
2024Greenyes30 Sept 2026
Language agents achieve superhuman synthesis of scientific knowledge2024Greenyes30 Sept 2026
Empowering biomedical discovery with AI agents2024Greenno30 Sept 2026
A review of large language models and autonomous agents in chemistry2024Greenyes30 Sept 2026
AI literacy and its implications for prompt engineering strategies2024Greenno1 Oct 2026
Developing a holistic AI literacy assessment matrix – Bridging generic, domain-specific, and ethical competencies2024Greenno1 Oct 2026
A complete and dynamic tree of birds2024Greenno1 Oct 2026
GeneGPT: augmenting large language models with domain tools for improved access to biomedical information2024Greenno1 Oct 2026
KRAGEN: a knowledge graph-enhanced RAG framework for biomedical problem solving using large language models2024Greenyes1 Oct 2026
The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery2024Greenyes30 Sept 2026
The ethics of using artificial intelligence in scientific research: new guidance needed for a new tool2024Greenyes30 Sept 2026
Artificial Intelligence and the Transformation of Higher Education Institutions: A Systems Approach2024Greenno30 Sept 2026
Resisting the Algorithmic Management of Science: Craft and Community After Generative AI2024Green· reviewedno1 Oct 2026
Cellular, Molecular, and Genetic Mechanisms of Avian Beak Development and Evolution2024Greenno1 Oct 2026
Obvious artificial intelligence ‐generated anomalies in published journal articles: A call for enhanced editorial diligence2024Greenno30 Sept 2026
LAB-Bench: Measuring Capabilities of Language Models for Biology Research2024Greenyes30 Sept 2026
Advancing Retrieval-Augmented Generation with Inverted Question Matching for Enhanced QA Performance2024Greenno30 Sept 2026
Evaluating Literature Reviews Conducted by Humans Versus ChatGPT: Comparative Study2024Greenyes1 Oct 2026
ChatGPT in Teaching and Learning: A Systematic Review2024Greenno1 Oct 2026
CRP-RAG: A Retrieval-Augmented Generation Framework for Supporting Complex Logical Reasoning and Knowledge Planning2024Greenno30 Sept 2026
Business insights using RAG–LLMs: a review and case study2024Green· reviewedno1 Oct 2026
CareerX: A Retrieval-Augmented Generation Framework for Personalized AI-Driven Career Guidance2023Greenyes30 Sept 2026
Improving deep learning acoustic classifiers with contextual information for wildlife monitoring2023Greenno30 Sept 2026
The evolution of aging and lifespan2023Greenno1 Oct 2026
Genome annotation: From human genetics to biodiversity genomics2023Greenyes30 Sept 2026
Evolutionary-scale prediction of atomic-level protein structure with a language model2023Greenno30 Sept 2026
Autonomous chemical research with large language models2023Greenyes30 Sept 2026
Fabrication and errors in the bibliographic citations generated by ChatGPT2023Greenyes30 Sept 2026
BioCLIP: A Vision Foundation Model for the Tree of Life2023Greenyes30 Sept 2026
BirdNET: A deep learning solution for avian diversity monitoring2021Greenno30 Sept 2026
Highly accurate protein structure prediction with AlphaFold2021Greenyes30 Sept 2026
Caroli Linnaei, Sveci, Doctoris Medicinae systema naturae, sive, Regna tria naturae systematice proposita per classes, ordines, genera, & species1735Greenno30 Sept 2026
Thinking microscopes: agentic AI and the future of electron microscopy2026Yellowno1 Oct 2026
Academic journals’ AI policies fail to curb the surge in AI-assisted academic writing2026Yellowyes30 Sept 2026
A multi-agent system for automating scientific discovery2026Yellowyes1 Oct 2026
Large Language Model Authorship in Ophthalmic Publications2026Yellowno30 Sept 2026
Genome modelling and design across all domains of life with Evo 22026Yellowyes30 Sept 2026
AI-mediated research agency formation in higher education: Autonomy, self-efficacy and innovation in early-career scientific training2026Yellowno30 Sept 2026
The Acceleration of Artificial Intelligence: Rethinking Organization and Work in an Era of Rapid Technological Change2026Yellowno30 Sept 2026
Redefining and measuring student agency in AI-assisted learning: Development and validation of the agentic engagement with AI (AE-AI) scale2026Yellowno1 Oct 2026
The Arrival of AGI? When Expert Personas Exceed Expert Benchmarks2026Yellowyes30 Sept 2026
Unpacking Interaction Profiles and Strategies in Human-AI Collaborative Problem Solving: A Cognitive Distribution and Regulation Perspective2026Yellowyes30 Sept 2026
Reimagining research papers as interactive and reliable AI agents2026Yellowno30 Sept 2026
PLANeT: Understanding and leveraging the genome of land plants for a sustainable future2026Yellowno1 Oct 2026
Design and Implementation of Large Language Model-Based Inference Pipeline for Fire Investigation2026Yellowno30 Sept 2026
The impacts and tensions of generative AI on doctoral students’ supervisory and peer dynamics: An activity theory analysis2025Yellowyes30 Sept 2026
The rise and potential opportunities of large language model agents in bioinformatics and biomedicine2025Yellowyes1 Oct 2026
Empowering LLMs by hybrid retrieval-augmented generation for domain-centric Q&A in smart manufacturing2025Yellowno30 Sept 2026
A Primer for Evaluating Large Language Models in Social-Science Research2025Yellowno30 Sept 2026
Improving large language model applications in biomedicine with retrieval-augmented generation: a systematic review, meta-analysis, and clinical development guidelines2025Yellowyes30 Sept 2026
AI-empowered human microbiome research2025Yellowyes1 Oct 2026
A comprehensive survey on integrating large language models with knowledge-based methods2025Yellowno30 Sept 2026
Agentic Lab: An Agentic-physical AI system for cell and organoid experimentation and manufacturing2025Yellowyes1 Oct 2026
Generative AI in Human-AI Collaboration: Validation of the Collaborative AI Literacy and Collaborative AI Metacognition Scales for Effective Use2025Yellowno30 Sept 2026
Artificial intelligence–powered biofoundries for protein engineering and metabolic engineering2025Yellowno30 Sept 2026
Automating Research Synthesis with Domain-Specific Large Language Model Fine-Tuning2025Yellow· reviewedyes30 Sept 2026
Design of highly functional genome editors by modelling CRISPR–Cas sequences2025Yellowyes1 Oct 2026
Human-generative AI collaboration enhances task performance but undermines human’s intrinsic motivation2025Yellowyes30 Sept 2026
A Brave New World of Human Resources Research: Navigating Perils and Identifying Grand Challenges of the GenAI Revolution2025Yellowno30 Sept 2026
Genome modeling and design across all domains of life with Evo 22025Yellowno30 Sept 2026
Large Language Models in Medicine: The Potentials and Pitfalls2024Yellow· reviewedyes30 Sept 2026
Artificial intelligence, workers, and future of work skills2024Yellowno1 Oct 2026
The Virtual Lab: AI Agents Design New SARS-CoV-2 Nanobodies with Experimental Validation2024Yellowno30 Sept 2026
The transformative impact of large language models on medical writing and publishing: current applications, challenges and future directions2024Yellowyes1 Oct 2026
“AI et al.” The perils of overreliance on Artificial Intelligence by authors in scientific research2024Yellowno30 Sept 2026
Generative AI at Work2024Yellowno30 Sept 2026
RAG-DIVE: A Dynamic Approach for Multi-Turn Dialogue Evaluation in Retrieval-Augmented Generation2026Orangeno30 Sept 2026
Agents of Chaos2026Orangeno30 Sept 2026
Faster AI, Uneven Frontier: Rapid Crossings, a Jagged Frontier, and the Repositioning of Human Judgment2026Orangeno30 Sept 2026
Asking Questions the Right Way: A Multi-Agent Conversational System for Prompt Formulation in Complex Task Resolution2026Orangeno30 Sept 2026
Orchestrating Human-AI Teams: The Manager Agent as a Unifying Research Challenge2025Orangeno30 Sept 2026
Monitoring AI-Modified Content at Scale: A Case Study on the Impact of ChatGPT on AI Conference Peer Reviews2024Orangeno30 Sept 2026
Population Genomics of Adaptive Radiation2024Orange· reviewedno30 Sept 2026
New frontiers in AI for biodiversity research and conservation with multimodal language models2024Orangeno1 Oct 2026
Sequence modeling and design from molecular to genome scale with Evo2024Orangeno30 Sept 2026
AFlow: Automating Agentic Workflow Generation2024Orangeno30 Sept 2026
Retrieval-Augmented Generation for Large Language Models: A Survey2023Orangeno30 Sept 2026
Rising adoption of artificial intelligence in scientific publishing: evaluating the role, risks, and ethical implications in paper drafting and review process2023Orangeno30 Sept 2026
Navigating the Jagged Technological Frontier: Field Experimental Evidence of the Effects of Artificial Intelligence on Knowledge Worker Productivity and Quality2023Orangeno30 Sept 2026
Evolutionary constraint and innovation across hundreds of placental mammals2023Orangeno30 Sept 2026
Affordance-Compiled Intelligence: Observable-Only Cognitive Impedance Matching for No-Meta LLM-Integrated Systems2020Orangeno30 Sept 2026
A Draft Sequence of the Neandertal Genome2010Orangeno30 Sept 2026
Twelve tips for teaching research skills in the age of agentic AI: A guide for health professions educators2026Redno1 Oct 2026
Artificial Intelligence for Academic Text Generation in Analytical Chemistry: Current Risks, Indicators, and Perspectives toward Greener and More Sustainable Approaches2026Redno30 Sept 2026
Agentic AI and the rise of in silico team science in biomedical research2026Redno30 Sept 2026
Autonomous biomedical research with an artificial intelligence agent2026Redno30 Sept 2026
Artificial Intelligence-Driven Enzyme Engineering from Structural Prediction to De Novo Design2026Redno30 Sept 2026
Exploring the Role of Generative Artificial Intelligence ( GenAI ) in Research Activities in Shaping Doctoral Students' Well‐Being2026Redno30 Sept 2026
Quantifying large language model usage in scientific papers2025Redno30 Sept 2026
Towards agentic smart design: An industrial large model-driven human-in-the-loop agentic workflow for geometric modelling2025Redno30 Sept 2026
ChatCNC: Conversational machine monitoring via large language model and real-time data retrieval augmented generation2025Redno30 Sept 2026
Multi-objective math problem generation using large language model through an adaptive multi-level retrieval augmentation framework2025Redno30 Sept 2026
From Matching to Generation: A Survey on Generative Information Retrieval2025Redno1 Oct 2026
Exploring the use of AI authors and reviewers at Agents4Science2025Redno30 Sept 2026
Simulating 500 million years of evolution with a language model2025Redno30 Sept 2026
The Virtual Lab of AI agents designs new SARS-CoV-2 nanobodies2025Redno30 Sept 2026
Toward autonomous discovery: agentic AI and the future of ophthalmic research2025Redno1 Oct 2026
Artificial intelligence and illusions of understanding in scientific research2024Redno30 Sept 2026
Artificial Intelligence: A Challenge to Scientific Communication2024Redno30 Sept 2026
Implementation and Evaluation of a ChatGPT-Assisted Special Topics Writing Assignment in Biochemistry2024Redno30 Sept 2026
How Artificial Intelligence Constrains the Human Experience2024Redno1 Oct 2026
A Survey on Hallucination in Large Language Models: Principles, Taxonomy, Challenges, and Open Questions2024Redno1 Oct 2026
RETRACTED: The three-dimensional porous mesh structure of Cu-based metal-organic-framework - Aramid cellulose separator enhances the electrochemical performance of lithium metal anode batteries
Retracted
2024Redno30 Sept 2026
AI–Human Hybrids for Marketing Research: Leveraging Large Language Models (LLMs) as Collaborators2024Redno1 Oct 2026
Ironies of Generative AI: Understanding and Mitigating Productivity Loss in Human-AI Interaction2024Redno30 Sept 2026
AI and science: what 1,600 researchers think2023Redno30 Sept 2026
Scientific discovery in the age of artificial intelligence2023Redno30 Sept 2026
Competencies Needed by Business Professionals in the AI Age: Character and Communication Lead the Way2023Redno1 Oct 2026
Evolution of Darwin’s finches and their beaks revealed by genome sequencing2015Redno30 Sept 2026